A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
- Contact E-mail
- trex_info@cornell.edu
- Reference Genome
- /workdir/TREx_shared/projects/6065D/custom_genome/eggnog.GenomeDir/
Report
generated on 2024-11-08, 16:15 EST
based on data in:
/local/workdir/TREx_shared/projects/6065D/work/c8/473729827777ba521c0159275ce05e
General Statistics
| Sample Name | % Aligned | M Aligned |
|---|---|---|
| 6065_NB1_LL07 | 41.4% | 29.9M |
| 6065_NB2_LL08 | 51.6% | 42.0M |
| 6065_NB3_LL09 | 53.4% | 33.5M |
| 6065_NB4_LL10 | 53.8% | 37.0M |
| 6065_NB5_LL11 | 35.5% | 25.7M |
| 6065_NB6_LL12 | 34.3% | 24.0M |
STAR
STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.
Alignment Scores
Gene Counts
Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.