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        Note that additional data was saved in 6065D.star.multiqc.report_data when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        Tool Citations

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        About MultiQC

        This report was generated using MultiQC, version 1.21

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Contact E-mail
        trex_info@cornell.edu
        Reference Genome
        /workdir/TREx_shared/projects/6065D/custom_genome/eggnog.GenomeDir/

        Report generated on 2024-11-08, 16:15 EST based on data in: /local/workdir/TREx_shared/projects/6065D/work/c8/473729827777ba521c0159275ce05e

        General Statistics

        Showing 6/6 rows and 2/2 columns.
        Sample Name% AlignedM Aligned
        6065_NB1_LL07
        41.4%
        29.9M
        6065_NB2_LL08
        51.6%
        42.0M
        6065_NB3_LL09
        53.4%
        33.5M
        6065_NB4_LL10
        53.8%
        37.0M
        6065_NB5_LL11
        35.5%
        25.7M
        6065_NB6_LL12
        34.3%
        24.0M

        STAR

        STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.

        Alignment Scores

        Created with MultiQC

        Gene Counts

        Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.

        Created with MultiQC

        MultiQC v1.21 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.